SNP Profiles matching PA 7 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	CC	AA	GG	CT	GG	AC	CC	AG	CC	GG	GG	AA	CC
1._RUQ_113	_	_	AA	GG	CT	_	AC	CC	AG	CC	_	_	AA	_
2._PA_7_[PER]	_	_	AA	GG	CT	_	AC	CC	AG	CC	_	_	AA	_
3._PA_7_[PER]	_	_	AA	GG	CT	_	AC	CC	AG	CC	_	_	AA	_
4._PA_7_[PER]	_	_	AA	GG	CT	_	AC	CC	AG	CC	_	_	AA	_
5._PA_7_[PER]	_	_	AA	GG	CT	_	AA	CC	AG	CC	_	_	AA	_
6._PA_7_[PER]	_	_	AA	GG	CT	_	AA	CC	AG	CC	_	_	AA	_
7._PA_7_[PER]	_	_	AA	GG	CT	_	AA	CC	AG	CC	_	_	AA	_
8._PA_7_[PER]	_	_	AA	GG	CT	_	AA	CC	AG	CC	_	_	AA	_
9._PA_7_[PER]	_	_	AA	GG	CT	_	AA	CC	AG	CC	_	_	AA	_
10._GC-04-030-2-12	TT	CC	AA	GG	CT	GG	AA	CC	AG	CC	GG	GG	AA	CC
11._GC-04-030-2-12	TT	CC	AA	GG	CT	GG	AA	CC	AG	CC	GG	GG	AA	CC
12._GC-04-030-2-12	TT	CC	AA	GG	CT	GG	AA	CC	AG	CC	GG	GG	AA	CC
13._GC-04-030-2-12	TT	CC	AA	GG	CT	GG	AA	CC	AG	CC	GG	GG	AA	CC
14._GC-04-030-2-12	TT	CC	AA	GG	CT	GG	AA	CC	AG	CC	GG	GG	AA	CC
15._PA_200_[PER]	_	_	AC	GT	CT	_	AC	-	AG	CC	_	_	AA	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
1._RUQ_113	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
2._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
3._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
4._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
5._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
6._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
7._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
8._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
9._PA_7_[PER]	AA	AA	CC	GT	GG	CC	_	TT	_	GG	_	_	_	GG
10._GC-04-030-2-12	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
11._GC-04-030-2-12	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
12._GC-04-030-2-12	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
13._GC-04-030-2-12	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
14._GC-04-030-2-12	AA	AA	CC	GT	GG	CC	CC	TT	CC	GG	AG	TT	AA	GG
15._PA_200_[PER]	AA	AA	CC	GT	CG	CC	_	CT	_	-	_	_	_	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	CG
1._RUQ_113	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
2._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
3._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
4._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
5._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
6._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
7._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
8._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
9._PA_7_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG
10._GC-04-030-2-12	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	TT	CC	CT	CG
11._GC-04-030-2-12	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	TT	CC	CT	CG
12._GC-04-030-2-12	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	TT	CC	CT	CG
13._GC-04-030-2-12	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	TT	CC	CT	CG
14._GC-04-030-2-12	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	TT	CC	CT	CG
15._PA_200_[PER]	CC	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_113	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._PA_7_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-04-030-2-12	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-04-030-2-12	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-04-030-2-12	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-04-030-2-12	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-04-030-2-12	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._PA_200_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_7_[PER] RUQ_113

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_7_[PER] RUQ_113

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._PA_7_[PER]

identical
24 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P61 842

Dapeng Zhang, 2016

3._PA_7_[PER]

identical
24 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 185 I-033

Dapeng Zhang, 2016

4._PA_7_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Row 2 C0214 27

Dapeng Zhang, 2016

5._PA_7_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 8

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._PA_7_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 1 > FP

Dapeng Zhang, 2016

7._PA_7_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 2 > FP

Dapeng Zhang, 2016

8._PA_7_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 3 > FP

Dapeng Zhang, 2016

9._PA_7_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4212 7 > FP

Dapeng Zhang, 2016

10._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

11._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

12._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

13._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP2

14._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

15._PA_200_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 710

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484